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Environmentally controlled invasion of cancer cells by engineered bacteria |
Anderson, J. C., Clarke, E. J., Arkin, A. P., Voigt, C. A. |
J Mol Biol. |
2005-11-14 |
Link |
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Cellular response of Shewanella oneidensis to strontium stress. |
Brown SD, Martin M, Deshpande S, Seal S, Huang K, Alm E, Yang Y, Wu L, Yan T, Liu X, Arkin A, Chourey K, Zhou J, Thompso |
Appl Environ Microbiol. 72, 890-900. |
2006-01-01 |
Link |
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Genome wide identification of functionally distinct subsets of cellular mRNAs associated with the mammalian splicing fac |
Gama-Carvalho M, Barbosa-Morais NL, Brodsky AS, Silver PA, Carmo-Fonseca M. |
Genome Biology |
2006-01-01 |
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Domains, motifs, and scaffolds: the role of modular interactions in the evolution and wiring of cell signaling circuits |
Roby P. Bhattacharyya, Attila Reményi, Brian J. Yeh, and Wendell A. Lim |
Annual Review of Biochemistry |
2006-01-01 |
Link |
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Averaging Methods for Stochastic Dynamics of Complex Reaction Networks: Description of Multiscale Couplings. |
Plyasunov, S., Arkin, A. P. |
Multiscale Model. Simul., Society for Industrial and Applied Mathematics. 5, 497 |
2006-01-01 |
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OpWise: operons aid the identification of differentially expressed genes in bacterial microarray experiments. |
Price MN, Arkin AP, Alm EJ. |
BMC Bioinformatics. 7, 19. |
2006-01-13 |
Link |
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Transcriptome profiling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH. |
Leaphart AB, Thompson DK, Huang K, Alm E, Wan XF, Arkin A, Brown SD, Wu L, Yan T, Liu X, Wickham GS, Zhou J. |
J Bacteriol. 188, 1633-42. |
2006-02-01 |
Link |
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Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough. |
Chhabra SR, He Q, Huang KH, Gaucher SP, Alm EJ, He Z, Hadi MZ, Hazen TC, Wall JD, Zhou J, Arkin AP, Singh AK. |
J Bacteriol. 188, 1817-28. |
2006-03-01 |
Link |
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A tightly regulated inducible expression system utilizing the fim inversion recombination switch. |
Ham TS, Lee SK, Keasling JD, Arkin AP. |
Biotechnol Bioeng. 94, 1-4. |
2006-05-05 |
Link |
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The life-cycle of operons. |
Price MN, Arkin AP, Alm EJ. |
PLoS Genet. 2, e96. |
2006-06-01 |
Link |
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The histidine operon is ancient. |
Price MN, Alm EJ, Arkin AP. |
J Mol Evol. 62, 807-8. |
2006-06-01 |
Link |
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Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach. |
Mukhopadhyay A, He Z, Alm EJ, Arkin AP, Baidoo EE, Borglin SC, Chen W, Hazen TC, He Q, Holman HY, Huang K, Huang R, Joyn |
J Bacteriol. 188, 4068-78. |
2006-06-01 |
Link |
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Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional a |
He Q, Huang KH, He Z, Alm EJ, Fields MW, Hazen TC, Arkin AP, Wall JD, Zhou J. |
Appl Environ Microbiol. 72, 4370-81. |
2006-06-01 |
Link |
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Model discrimination using data collaboration. |
Feeley R, Frenklach M, Onsum M, Russi T, Arkin A, Packard A. |
J Phys Chem A Mol Spectrosc Kinet Environ Gen Theory. 110, 6803-13. |
2006-06-01 |
Link |
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Genomics for environmental microbiology. |
Deutschbauer AM, Chivian D, Arkin AP. |
Curr Opin Biotechnol. 17, 229-35. |
2006-07-01 |
Link |
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Fast, cheap and somewhat in control. |
Arkin, A. P., Fletcher, D. A. |
Genome Biol. 7, 114. |
2006-07-01 |
Link |
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Simulating cell biology. |
Andrews, S. S., Arkin, A. P. |
Curr Biol. 16, R523-7. |
2006-07-25 |
Link |
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Temporal transcriptomic analysis as Desulfovibrio vulgaris Hildenborough transitions into stationary phase during electr |
Clark ME, He Q, He Z, Huang KH, Alm EJ, Wan XF, Hazen TC, Arkin AP, Wall JD, Zhou JZ, Fields MW. |
Appl Environ Microbiol. 72, 5578-88. |
2006-08-01 |
Link |
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Structural basis for unique mechanisms of folding and hemoglobin binding by a malarial protease |
Wang SX, Pandey KC, Somoza JR, Sijwali PS, Kortemme T, Brinen LS, Fletterick RJ, Rosenthal PJ, McKerrow JH |
Proceedings of the National Academy of Sciences of the USA |
2006-08-01 |
Link |
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Computational design of a new hydrogen bond network and at least a 300-fold specificity switch at a protein-protein interface |
Joachimiak LA, Kortemme T, Stoddard BL, Baker D |
Journal of Molecular Biology |
2006-08-04 |
Link |
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How golden is silence? Teaching undergraduates the power and limits of RNA interference. |
Natalie Kuldell |
CBE Life Sci Educ. |
2006-09-01 |
Link |
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Morphology matters in immune cell chemotaxis: membrane asymmetry affects amplification. |
Onsum MD, Wong K, Herzmark P, Bourne HR, Arkin AP. |
Phys Biol. 3, 190-9. |
2006-09-25 |
Link |
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Deviant effects in molecular reaction pathways. |
Samoilov, M., Arkin, A. P. |
NATURE BIOTECHNOLOGY. 24, 1235-1240. |
2006-10-01 |
Link |
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Genetic parts to program bacteria |
Voigt CA |
Current opinion in Biotechnology |
2006-10-01 |
Link |
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Docking interactions in protein kinase and phosphatase networks |
Remenyi A, Good MC, Lim WA. |
Current Opinion in Structural Biology |
2006-10-31 |
Link |
